Re: should a boat flex?
Do you see any stress cracks at the obvious pivot points on the hull? If so, then the answer is definitely "no", the hull should not flex. Stringers and hull-to-deck joints are where I would look for failure severe enough to cause the boat to bend.
Now if you are just talking about the floor where you were standing "feeling like" it was flexing, well, that's not as serious. You could just have some water intrusion, causing the plywood core to go soft. That happens to quite a few boats, and the fix is not that bad. Or you could just live with it.