Re: 2x4's or 2x6's for bunks?
More contact between the hull and the bunks? Flex that matches the hull? Cover those 2 X 6's with a layer of truck tread. Pick up some from the highway if necessary and be earth friendly.

Then cover the tread and board with "Astro Turf". The hull will rest comfortably on the giving surface of the carpet/rubber and give you no problems.
I have done this for vessels between 500 lbs and 20K lbs. I hate hull hogging and this will help prevent it.