Just recently replaced my trolling motor (went from 24V to 12V) and now have two batteries (deep cycle for trolling motor and regular for cranking an 80's model 50hp Merc) separated by a West Marine battery combiner (50 amp) as recommended in this forum. Although the combiner seems to be working fine as far as maintaining the charge of the batteries while out on the water, I still want to hook up my charger (external Sears charger with one positive and one negative) when I get back to make sure they are fully charged. My battery charger has the normal switch for 12V-10A and 12V-2A charging and a selector switch for for battery type, either deep cycle or all others. I plan on using the 2 amp rate mostly but was wondering which battery type should I select. For instance, if I hook the charger up to the trolling motor battery I normally would use the deep cycle setting. Now that I have the combiner inline, I am thinking that while charging the trolling motor battery (at home) the combiner is also letting the starting battery charge. If that is the case, would having the charger on deep cycle setting hurt the starting battery? Which battery should I hook up to with this system (if the combiner does let both charge at the same time) and what battery type setting should I go with on the charger? What is the best way to make sure both batteries are maintained as well as possible other than what I am doing? Thanks in advance for your help!