Re: hpdi 250 surging
do you have an EFI fuel rail tester? you MUST maintain 48 PSI from the VST to the high pressure pump and a minimum of about 1000 PSI on the high pressure rail. do you have access to the laptop or at a minimum the diagnostic test lamp to look for any monitored sensor codes?
at a minimum you MUST have the factory shop service manual and a decent Digital Voltmeter with a DVA adapter to test the injector drivers,the high pressure fuel sensor and a few other things.
your describing a lack of fuel,how long did this engine sit before you got it and what is its maint history?
also run the PID through a Yamaha dealer to make sure all updates were done on the oiling system.
if you do not have the manual and the basic test equipment I will have to reccomend finding a shop with at least one Master tech employed to find the issue BEFORE it wipes a piston.