^^^^^^^^Like he said.....
I need more info. How are you measuring temps, where are you measuring temps, and most importantly, when those hoses are disconnected, free flowing water out into the lower pan, what is the temp of that water? Surely you can measure that temp the same way you are determining that one side is hotter than the other.
If that water temp is the same on both sides, then the PLACE you are MEASURING is hotter, not the whole engine bank.
If it happens to be the same temp on both flows of water, then that brings me back to the head and head cover assembly. Especially if you are measuring temps on the head cover surface.