Perhaps I'm missing something here, but how is starting the engine going to help mix the fuel? I've always been told to add it before filling up so that the motion of the gas filling the tank allows it to mix, but I don't think starting the engine will do much for you.
One thought, if the boat is on a trailer and you are really concerned about it, you could always tow it around town, up and down some hills, around a few corners, etc. Just a thought.