Cpt, I just rewired my boat, because it was very similar to yours ( but I do admit yiu have me beat with the THHN wire ) and here is what i did.
1- Use only marine grade wire, minimum 16 guage.
EDIT: Use 2 charts for determining wire size. One is the ampacity of the wire. Another is the voltage drop of the wire based on gauge vs length. If you need help finding it, i can post them. Now, the voltage drop chart has 2 sections, critical circuits ( allowing only 3% drop ) and non critical ( allows up to 10%), based on that device you are wiring. Example ( although I do not believe all need only 3% drop ) Nav lights, VHF, Bilge, Blowers, etc ) are critical, but your stereo and cabin / cockpit lights are not.
END OF EDIT
2- Use good quality crimp connectors with heat shrink tubing on them. ( If you want a long discussion on this, see
http://forums.iboats.com/forum/gener...crimp-and-tape ), with a quality crimp tool. See this link
http://www.pbase.com/mainecruising/wire_termination
3- I ran 8ga wire + and - to the console (dash) and used a switch panel with circuit breakers and a main distribution point. Use an inline fuse at the battery end of the positive wire.
3 Bilge pump, i have a float switch, so that line and the groung line to the pump ran directly to the battery , using 12 ga wire and anotger fuse at the battery side. The manual sidw of the bilge pump came from the switch panel, using 12 ga. ( 12 ga seems like overkill, but i wanted the least voltage drop possible, as this is a devive that the output depends on unput voltage)
I actually used a Blue Sea Battery Terminal Mount 4 circuit at the battery terminals, instead of separate inline fuses.
3.5 (edit) Label each wire, including each ground. I use a label maker, small tape and use clear heat shrink tubing ( non adhesive kind ) over the label
3.7 Bus bars for the ground poonts under the das help.
4- Plan ahead and take your time. Remove 1 circuit at a time and replace it.
Good luck.