AQC treated (green stuff) is to be avoided at all costs as it will eat your aluminum boat. Aluminum boat manufacturers use CCA treated plywood, but it's hard to find, EPA ban...
A homebrew borate wood treatement can be made from borax, roach powder and antifreeze (google it), boil it up to dissolve the minerals, soak the wood, wash off the excess and allow to dry thoroughly. I used this on my 18' boat's marine plywood, no rot, but I'm in the desert...
I used 3/8" decks on my 14' jon boat, they are more then sufficient. I sealed the decks in thinned polyurethane, then a couple coats of polyurethane (or was it spar varnish?...) they have held up great for 10 years. 3/8 ply has few layers, so the thinned poly (spar?) soaked into all the layers. It's not like 1/2 or 3/4 that will have issues getting the center layers penetrated.