You're overthinking whatever problem you think you have... or had. The lower unit needs reworking or replacing... forget about any L/U problem affecting the powerhead other than jamming it.
The piston moving, some other piston or pistons not moving thing. You can't seem to grasp that the crank doesn't just go down, stop, then start going up.... there's a few thousands whereas the crankshaft either hits top travel or bottom travel and at that point it does not move up or down, it transitions sideways a few thousands to complete its travel to the opposite direction. Forget about it... sorry I mentioned it.
If you're worried about vertical play, wear, whatever.......
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(Piston Play Check)
(J. Reeves)
This procedure will tell you if there is any wear or play in the Wrist Pin, Wrist Pin Bearing, or Connecting Rod to Crankshaft area.
Remove the spark plugs. Insert a screwdriver, dowel, punch, or some object of your choice through the s/plug hole and into the cylinder/piston area. Hold the tool lightly against the top of the piston. Turn the flywheel by hand, bringing the piston up to top dead center, then continue turning the flywheel to pull the piston down about a inch..... all the while holding the tool lightly against the piston top.
Now, at the point whereas the piston has been dropped down about a inch, grab the flywheel and hold it firmly. Now, push that tool solidly and firmly against the piston top.
If the piston moves without moving the flywheel, there is a problem (wear, play, clearance, etc) somewhere with the items mention in the first sentence. Be sure to check all of the pistons/cylinders.
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