I think you fixed it. Voltages sound good. I really wouldn't be concerned about the differences in brightness, but double-check the points gap if it will help you feel better.
Just FYI without getting into a bunch of electrical theory, when the points are closed there is a current flow through the external resistor and the coil's primary winding. That current flow results in a voltage drop across the resistor and coil primary, the amount of voltage drop across each depending on the resistance of the two units. Adding the two voltage drops together will equal the source (battery) voltage. When both sets of points are open, continuity breaks and therefor current no longer flows, so there are no voltage drops .and voltage returns to source voltage around 12V more or less. Yes, your meter is being confused when the voltage change so rapidly.
OK, I know I've already lost most of the average bears reading this. But it's just basic electricity 101. A lot of bears might benefit by a bit of study on 101.