New spark plug today, and both sides of the engine are now the same temperature, interesting. I used one of those little infra red thermometers, and got about 125 deg F on the side of the blocks, and about 115 deg F on the side of the heads after a fast 5 minute run. The engine sounds like its missing a cylinder now and then below 2500 RPM, and the plugs are still coming out a bit wetter than I'd like, but I'll pursue that another day.
-Chris