Re: Are batteries charged while running outboard?
Without a VSR charge controller you will only be charging the 12VDC connected battery, the second battery is connected in 24VDC parallel and does not receive a charge while the engine is running.
Most folks use some sort of VSR (voltage sensitive relay) or ACR (automatic charge controller) to distribute the charge amongst their batteries while the motor is running.
I use a BEP Marine VSR/distribution switch, it works great and really extends the trolling time if I am out camping and don't have access to a plug in to charge the bats. There are many manufacturers of these products and many choices out there.
http://www.bepmarine.com/Clusters-180.html \
This is the one I have on my dual battery setup but I run a 12VDC trolling motor off the second bat.
http://www.bepmarine.com/Single-Engine%2C-Two-Battery-Banks-180-1460.html
As for connecting your 12VDC electric loads, mine all run off my starting battery so when the motor is running the motor sees the load and charges accordingly. You can run them off the second battery but most manufacturers do not recommend running sensitive electronics from the second battery due to the interference and sudden switching that occurs when the VSR/ACR cuts in to charge the second battery.
Standard hookup is;
All electric loads off main battery and only the trolling motor gets hooked up to the second bat for 24VDC operation, make sure you buy the right ACR/VSR for your configuration of 12/24VDC hookup. With the BEP setup it doesn't matter but others might make a distinction.
For the ultimate in flexibility and safety a second battery added to your boat to run the trolling motor in 24VDC is the ideal setup, this way you always have a fully charged battery to start the motor and you can utilize the 24VDC parallel battery set to full capacity without fear of not being able to start the motor.
Your motor likely only has a stator charging circuit with an under 20A capacity (you need a much larger motor to get a real alternator), my 90HP Merc only has a 16A capacity stator. I find 16A enough to charge my bats and keep them topped up but serious daily use of the trolling motor would eventually run the second bat down requiring charging overnight to restore it to full capacity. 3 days of camping with 45 minute runs back to camp is enough to keep the first starter bat charged for the trip but the second bat needs charging when I get home.
If you are running spotlights all the time cut your trolling motor run times in half to get a realistic figure of how long you can run them. BTW the other posters are right, spotlights are for sitting fishing...not running down the river/lake/ocean at speed.
Good luck.
