Several types of thread taps can be purchased. The most common is tapered and gradually cuts threads in new material. This type of tap will not "clean " the threads close to the bottom if it is a blind hole. A blind hole being one that does not go all the way through. For this type of threaded hole you might want to use a bottoming tap. It is designed to cut threads close to the bottom of the hole and will do a better job cleaning the threads down to the bottom. Lots of lube and go slow backing the tap out to clean it often. I always do 1 turn fwd then 1/4 turn back and repeat. Removing every four turn or so to clean the tap. Follow with compressed air to clean as stated above. Just my procedure, good luck.