Re: which fiberglass to use?
You can save yourself the expense of the CPES and use regular poly resin to coat the stringers with...you can just reduce it with acetone to get it to penetrate. If you are encapsulating the stringers with fiberglass so that water cannot get to the wood, then you really don't need to protect the wood that mightily.
As far as glassing everything in goes, you can do your initial wrap with CSM ( chopped strand mat ). Lightweight stuff like 3/4oz will conform to the curve over the top of the stringer as you can tear it slightly to make it work, or you can use a light cloth that will conform to the top ( cap ) of the stringers. After the stringers are completely sealed with a layer or even two of the light stuff, then you'd want to use a heavier grade fiberglass to shore them up. A product called 1708 is used commonly. It's a grade of glass that uses mat as a backing to stick to the layer underneath, and uses the top layer for the strength. It's stitched together, not woven-which gives it great strength. Not horribly expensive either.
As far as the transom goes, CSM works fine as the wood is the strength there, as well as the deck. You just want to make sure you have enough layers that it isn't easily punctured. I plan to use the huge roll of 3/4 oz CSM I picked up and use 2 layers on the bottom of the deck, and probably 4 layers on the top...possibly more since I've got so much to use.
There are a lot of specialty types of fiberglass out there. check out
www.uscomposites.com website, it'll help you decide what is best for you.