Looking good Chrismas, you are making good progress.
Just want to caution you to take measurements and think about building a cradle or support for your hull some how. The more you remove from the hull like the cap, deck, stringers etc the hull will start to flex and move. This makes it hard to put together and get the cap back on. I braced mine to the trailer to keep its shape, probably could have done better on this but seems ok. I also put the cap back on before re-installing the stringers and deck to make sure it would fit.
There are a lot of options to cover the inside of the hull that is visible. You could just sand off the loose paint and re-paint it. A lot of boats have carpet or wood panels covered in vinyl or other fabric to hide the inside of the hull on the sides. Just depends on how much time and money you want to spend on it.
When you are putting the cap back, after its fiberglassed together you can use filler and fine sand paper to make it as smooth as you want it. The either paint it or gel coat it.
If you can get the boat all put back together, fixing the steering etc, should be pretty easy in comparison. I would try and save/re-use what you have, at least until you can figure out what is good and bad. How long has the motor been sitting, does it turn over freely by hand?
I really love the older Johnson/evinrude motors, always have been reliable and easy to get parts for. Like sphelps suggested the guys on the engine repair forums are a huge help and very knowledgeable. If you are going to work on the motor a proper manual and wiring diagram are very helpful and save a ton of time.