Re: Dual 12v in parallel OR dual 6v in series???
The two 6v in series is not the same as one 12v unless you are talking about voltage only. Most tractor trailers (semi) along with some farm equipment uses two (or more) 6v in series instead of one 12v due to the quick discharge ability of the 6v batteries, quick recovery time, and amp hours. Tractor trailers can have as many as eight 6v starting batteries in their truck and the reason for so many is the cranking amps. A farm tractor is the same way.
Now take it to the other side, electric golf carts. Here it is important to have the amp hours. They are often filled with 6v deep cycle instead of 12v deep cycle batteries due to amp hours.
Would two 12v in parallel have more amp hours than two 6v in series? It all depends of the amp hours of each battery. Lets look at interstate batteries as an example since it is used by many. The GC2 U2200 (6v) has 232 amp hours. The Optima SC31DM (12V) has 75 amp hours. That would mean that the two 6v in series would have 314 more amp hours as two 12v in parallel. But look at the warranty and price. The 6v has 6 month warranty. The 12v has 18/36. The 6v cost about $100. The 12v cost about $250. So what do you get, less amp hours for more cost using 12v.
http://www.interstatebatteries.com/cs_eStore/content/product_info/marine_f.asp
Look for yourself at cost and amp hours and shop around. You can get a very good 12v battery from Walmart or such for about the same price or cheaper. You can also get the 12v in higher amp hours. You can also find 6v in lower amp hours or more expensive. It all depends on price/warranty/amp hours.
One big disadvantage of 6v system is if one battery starts going bad, it can often bring the whole system down with it. You will have to load test each battery to find the weak one and replace that one. It is not as dramatic with a 12v parallel system. You still notice the system as a whole show weakness with 12v, just not as dramatic.
If you have the room, I would recommend going with two (or more) 6v instead of two (or more) 12v. That is only if you have the room and can handle the weight. The negatives are easily masked by the advantages.